Links ➧

Links to software tool resources –

• • sequence analysis
• MagicMatch {soon} [simple sequence matching] [PMID: 15961438]
• CAST [compositional bias masking] [PMID: 11120681]
• GeneRage {soon} [protein family inference] [PMID: 10871267]
• MCL [large-scale graph clustering] [PMID: 11917018]
• HipMCL [high-performance parallel MCL] [PMID: 29315405]
  • visual analysis
• bioLayout [network visualization] [PMID: 11590107 16000016]
• BioPAX.Client [pathway reader/modifier] [PMID: 28453679]
• BioPAX.Viz [pathway evolution visualizer] [PMID: 28453679]
• FUGA [network analysis] [PMID: 22035155]
  • document clustering
• bioTextQuest [document clustering] [PMID: 11262957 21994227 25100685]
  • ancestral inference
• GeneTrace {soon} [gene content] [PMID: 12874054]
• PathTrace [pathway content] [PMID: 12874054 32924924]
  • other (unpublished)
• BPM [blast/PPs/Mcl pipeline] [poster: link]

last update: 2021-03-17

Links to specialized data resources –

• BRIDE database [LDIR response genes] [PMID: 27170263]

Links to educational/training material –

• CMW 2014 workshop [H3Abionet, U Mauritius]
• BCGA2014 practical course [Hellenic Pasteur institute]
• others will follow (2015-04-19, now 2021-03-17)